Works Cited


Asturias FJ, Meredith GD, Poglitsch CL, Francisco J, and Kornberg RD. Two Conformations of RNA Polymerase II Revealed by Electron Crystallography. J Mol Biol 1997; 272:536-540.

Awrey DE, Weilbaecher RG, Hemming Sa, Orlicky SM, Kane CM, and Edwards AM. Transcription Elongation through DNA Arrest Sites. J Biol Chem 1997 Jun 6;272(23):14747-54.

Azuma Y et al. Nuc Aci Research 1991;19(3):461-8.

Beattie K et al. J Mol Biol 1997;116:783-803.

Bradsher, John, Coin, Federic and Egly, Jean-Marc.  Distinct Roles for the Helicases of TFIIH in Transcription Initiation and Promoter Escape.  J. Biol. Chem. 2000, Jan 28; 275(4): 2532-2538.

Carey, M. and Smale, Stephen T. Transcriptional Regulation in Eukaryotes: Concepts, Strategies and Techniques. Cold Spring Harbor: Cold Spring Harbor Laboratory Press; 2000.

Cheney S et al. J Eukaryot Microbiol 2001 Jan/Feb;8(1):111-7.

Cheriyath, Venugopalan and Roy, Ananda L.  Structure-Function Analysis of TFII-I.  J. Biol. Chem. 2001 Mar 16; 276(11): 8377-8383

Cramer, P., Bushnell, D. A., Fu, J., Gnatt, A. L., Maier-Davis, B., Thompson, N. E., Burgess, R. R., Edwards, A. M., David, P. R., and Kornberg, R. D. (2000).   Architecture of RNA Polymerase II and Implications for the Transciption Mechanism. Science. 288, 640 – 649.

Ebright, R. H. (2000). RNA Polymerase: Structural Similarities Between Bacteria RNA Polymerase and Eukaryotic RNA Polymerase II. J. Mol. Biol. 304, 687 – 698.

Forbes D et al. J Cell Biol 1993;97:62-72.

Gervais, V., Wasielewski, E., Busso, D., Poterszman, A., Egly, J. M., Thierry, J. C., Kieffer, B.: Solution Structure of the N-Terminal Domain of the Human Tfiih MAT1 Subunit: New Insights Into the Ring Finger Family To be Published

Hampsey, Michael.  Molecular Genetics of the RNA Polymerase II General Transcription Machinery.  Micobiology and Molecular Biology Review 1998 Jun; 62(2): 465-503.

Hull MW, McKune K, and Woychik N. RNA polymerase II subunit RPB9 is required for accurate start site selection. Gen Dev 1995 Jan 20;9:481-490.

Ishiguro A, Kimura M, Yasui K, Iwata A, Ueda S, and Ishihama A. Two Large Subunits of the Fission Yeast RNA Polymerase II provide Platforms for the Assembly of Small Subunits. J Mol Biol 1998;279:703-12.

Kamada, K., De Angelis, J., Roeder, R. G., Burley, S. K.: Crystal Structure of the C-Terminal Domain of the RAP74 Subunit of Human Transcription Factor Iif Proc.Nat.Acad.Sci.USA 98 pp. 3115 (2001)

Katayama A et al. J Biol Chem 2000;275:3583-92.

Kedinger C, Gisinger F, and Chambon P. Eur J Biochem 1974;44:421-36.

Kim WA et al. J Biol Chem 1989;264:3169-76.

Kornberg, RD et al. Science. 2001;292:1863-1874.

Langelier, Marie-France et al.  Structural and Functional Interactions of TFIIA with TFIIE and TFIIF in Transcription Initation by RNA Polymerase II.  J. Biol. Chem. 2001 Oct 19; 276(42): 38652-38657.

Latchman, David S. Eukaryotic Transcription Factors 2nd Ed. Academic Press Ltd; 1995.

Losick, R. and Chamberlain M. Editors. RNA Polymerase. Cold Spring Harbor Laboratory; 1976.

Makoto K et al. Eur J Biochem 2001;268:612-619.

Minakhin, L., Bhagat, S., Brunning, A., Campbell, E. A., Darst, S. A., Ebright, R. H., and Severinov, K. (2001). Bacterial RNA polymerase subunit w and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA assembly. PNAS, 98(3), 892 – 897.

Morin, P. E., Awrey, D. E., Edwards, A. M., Arrowsmith, C. H.: Elongation Factor Tfiis Contains Three Structural Domains: Solution Structure of Domain II Proc.Nat.Acad.Sci.USA 93 pp. 10604 (1996)

Nelson, David L., and Cox, Michael M.  2000 Lehninger Principles of Biochemistry. New York: Worth Publishers.  Pg. 989

Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y.: Structure of the Central Core Domain of Tfiie Beta with a Novel Double- Stranded DNA-Binding Surface Embo J. 19 pp. 1346 (2000)

Papavassiliou, Athanosios G.  Transcription Factors in Eukaryotes.  Austin: Landes Bioscience.  1997.  26-28

Pederson, David S. and Heintz, Nicholas H. Transcription Factors and DNA Replication. R.G. Landes Company; 1994.

Riva M, Schaffner AR, Sentenac A, Hartmann GR, Mustaev AA, Zaychikov EF, and Grachev MA. Active Site Laeling of the RNA Polymerase A, B, and C from Yeast. J Biol Chem 1987 Oct 25; 262(30):14377-14380.

Robert et al. Trends in Biochm 1991;16:506-9.

Roeder, Robert.  The Role of General Initiation Factors in Transcription by RNA Polymerase II.  TIB 1996; 21: 327-335

Roeder RG and Rutter WJ. Multiple Ribonucleic Acid Polymerases and Ribonucleic Acid Synthesis During Sea Urchin Development. Biochem. 1970. 9:2543-2544.

Roy, Ananda L.  Biochemistry and Biology of the Inducible Multifunctional Transcription Factor TFII-I.  Gene 2001 Aug22; 274(1-2): 1-13

Schwartz LB and Roeder RG. J Biol Chem 1975;250:3221-28.

Stewart P. R. and Letham, D. S. Editors. The Ribonucleic Acids. New York: Springer-Verlag; 1973.

Sentenac A and Paule MR. Trends in Biochem 1981;6:128-131.

Sentenac A. CRC Crit Rev Biochem 19855;18:31-90.

Sentenac A and Sawadogo M. RNA Polymerase B and General Transcription Factors. Ann. Rev. Biochem. 1990; 59:711-54.

Sentenac A, Riva M, Carles C, Grachev MA, Arkady AM, and Evgueny FZ. Mapping the Active Site of Yeast RNA Polymerase B (II). J Biol Chem 1990 Sept 25;265(27):16498-503.

Severinov, K. PNAS.2001;98:5-7.

Sweetser D, Nonet M, and Young RA. Prokaryotic and eukaryotic RNA polymerases have homologous core subunits. J Bchm 1987 March;84:1192-1196.

Weaver, R. Molecular Biology 2nd Ed. New York: McGraw Hill. 2002. 266-279.

Weaver, Robert F.  Molecular Biology.  2nd Ed. New York: McGraw-Hill 2002.  316-318.

Wjatschesslaw A et al. J Biol Chem 1999 Feb 19;274(8):5104-13.

Weiss SB and Gladstone LJ. Am Chem Soc 1959; 81:4118-4119.

Winkler, Sebastiaan G. et al.  TFIIH with Inactive XPD Helicase Function in Transcription Initiation but is Defective in DNA repair.  J. Biol. Chem.  2000 Feb 11; 275(6): 4258-4266

Woychik NA et al. Trends in Biochem 1990;15:383-7.

Woychik NA, Lane WS, and Young RA. Yeast RNA Polymerase II Subunit RPB9 Is Essential for Growth at Temperature Extremes. J Biol Chem 1991 Oct 5;266(28): 19053-55.

Woychik NA, Hampsey, M.  The RNA Polymerase II Machinery: Structure Illuminates Function. Cell. 2002 Feb 22; 108: 453-463.

Young AR. RNA Polymerase II. Annu Rev Biochem 1991; 60:689-715.

Young RA and Myer VE. RNA Polymerase II Holoenzymes and Subcomplexes. J Biol Chem 1998;273:27757-27760.

Zhang, G., Campbell, E. A., Minakhin, L., Richter, C., Severinov, K., and Darst, S. (1999). A. Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 A Resolution. Cell, 98: 811 – 824.


Website sources
Home Page:  The Interactive Fly © 1995, 1996 Thomas B. Brody, Ph.D.  Last updated 2-15-2001. http://sdb.bio.purdue.edu/fly/aimain/1aahome.htm

Home Page: Jeff DeJong, Associate Professor, Pennsylvania State University http://nsm1.utdallas.edu/bio/Dejong/dej99.html

"Structure of Human Transcription Factor Proteins Revealed in 3-D," Lynn Yarris, Research News, 1999. 
From this web address:  http://www.lbl.gov/Science-Articles/Archive/human-transcription-factor.html

Website:  Basal Transcription Factor Information.  Created by Steve Buratowski, Harvard Medical School.  Viewed on 4-30-2002.  http://tfiib.med.harvard.edu/transcription/basaltx.html

Website of The Nogales Lab, Howard Hughes Medical Institute, Molecular & Cell Biology, UC Berkeley, Lawrence Berkeley National Library.  Last updated on 4-24-2002.  http://octem.berkeley.edu

Website of Ernest Martinez, Assistant Professor of Biochemistry, Department of Chemistry, University of California, Riverside.  Viewed on 4-28-2002.  http://cnas.ucr.edu/~biochem/faculty/martinez.html

“Activation of RNA Polymerase II Transcription.”  Arnold J. Berk.  Current Opinion in Cell Biology 1999, 11:330335. 
http://www.bch.msu.edu/courses/bch801/Berk.pdf

Website of the Hahn Laboratory, made by Steven Hahn, Ph.D.
The Fred Hutchinson Cancer Research Center and Howard Hughes Medical Institute
1100 Fairview Ave N., Seattle WA.  Last updated 4-8-2002.

Website:  Course home page of PLSC 731 created by Phillip E. McClean, Instructor, the Graduate School, North Dakota State University, Fargo, ND.  http://www.ndsu.nodak.edu/instruct/mcclean/plsc731/731a.htm

Website:  Homepage for The Richmond Lab, Institute for Molecular Biology und Biophysics ETHZ, Zurich, Germany.  Viewed on 4-30-2002.  http://www.mol.biol.ethz.ch/richmond/index.html

“3-D Structure of Human Transcription Factors Proteins Revealed.”  Reprinted from Science Daily Magazine, posted 12-13-1999.  http://www.sciencedaily.com/releases/1999/12/991213050600.htm


HOME to RNA Pol II in Eukaryotes and Prokaryotes