#Rasmol commands for 2ypi.pdb
#(Load the molecule first, probably from the menu bar
#  rather than the command line.)
restrict atomno<1893
wireframe 50
ribbons
color purple
select sheet
cartoons
color green
select helix
cartoons
color orange
restrict atomno<1893
# The coloring scheme leaves loop regions in purple.
# PGA is the substrate analogue:  note the active site location
# We will color it with the normal conventions (O = red etc.)
select pga
wireframe 300
color cpk
restrict atomno<1893
translate x -20
translate y -0
zoom 150
center atomno=1567
# At this point, spin the molecule around to look at the beta
# barrel.
#The next three commands will cripple rotation
#and perhaps display except on a relatively fast computer
set specular on 
set shadows on
# Once you've seen the secondary/tertiary structure, explore
# the protein packing.
spacefill
#You may want to do the next three before trying to spin the
#molecule around.
spacefill off
set specular off
set shadows off
#
select hydrophobic
color green
select polar
color purple
select lys or arg
color red
select asp or glu
color blue
slab 50